From: "Marco van Hulten" <marco@hulten.org>
Subject: Re: [update] geo/cdo 2.5.3 -> 2.5.4
To: "Martin Reindl" <martin@catai.org>, <ports@openbsd.org>
Date: Sat, 06 Dec 2025 12:47:23 +0100

Hi Martin &al.,

On Sat Dec 6, 2025 at 8:42 AM CET, Martin Reindl wrote:
> Am 02.12.25 um 13:36 schrieb Marco van Hulten:
>> Hello,
>> 
>> When I increase the version of geo/cdo, it complains about an old
>> version of libxml:
>> 
>> Error: can't solve dependency for libxml-2.14.5p0(textproc/libxml,-main)
>> Fatal: Subpackage -main does not exist. (in textproc/libxml)
>> *** Error 1 in textproc/libxml (/home/_ports/infrastructure/mk/bsd.port.mk:3892 '.BEGIN': @exit 1)
>> *** Error 1 in /home/_ports (infrastructure/mk/bsd.port.subdir.mk:163 'print-plist-libs-with-depends': @case X${_DEPENDS_CACHE} in  X) _DEPE...)
>> 
>> Where does it get this old version from?  In the Makefile xml2 was
>> specified in the WANTLIB (no version number).  Removing the WANTLIB
>> lines and then doing port-lib-depends-check gets me a WANTLIB where
>> 'xlm2' is removed, but then doing a make clean and repeating the make
>> port-lib-depends-check still results in this error message.
>> 
>> make fake install test and just running the program gives no problems.
>> 
>
> That's because it still picks up libxml2 during the build. The error you
> were seeing is because of possbile leftovers from an old libxml2 port,
> version 2.15.1 is the current version.

Right!  Indeed, I had an old math/hdf5 in mystuff/.  Good practice is
probably to always remove the respective directory below mystuff/ as
soon as (that or a newer version) gets imported into CVS.

> CDO uses XML routines, it needs to remain in WANTLIB.

Fixed diff:


diff -r c271928b0990 geo/cdo/Makefile
--- a/geo/cdo/Makefile	Wed Dec 03 10:36:27 2025 +0100
+++ b/geo/cdo/Makefile	Sat Dec 06 12:36:06 2025 +0100
@@ -1,6 +1,6 @@
 COMMENT =		manipulate and analyse climate and NWP model data
 
-DISTNAME =		cdo-2.5.3
+DISTNAME =		cdo-2.5.4
 
 CATEGORIES =		geo
 
@@ -12,7 +12,7 @@
 PERMIT_PACKAGE =	Yes
 
 # number changes at newer version
-SITES =			https://code.mpimet.mpg.de/attachments/download/30045/
+SITES =			https://code.mpimet.mpg.de/attachments/download/30128/
 
 FAKE_FLAGS =            PREFIX="/usr/foo"
 
diff -r c271928b0990 geo/cdo/distinfo
--- a/geo/cdo/distinfo	Wed Dec 03 10:36:27 2025 +0100
+++ b/geo/cdo/distinfo	Sat Dec 06 12:36:06 2025 +0100
@@ -1,2 +1,2 @@
-SHA256 (cdo-2.5.3.tar.gz) = Rw/uj00rTt357ILQrczx9rSCHd80szv+a3BptrZFe0A=
-SIZE (cdo-2.5.3.tar.gz) = 13973520
+SHA256 (cdo-2.5.4.tar.gz) = x/wX0+2owhbtsvXjbIqzK8rutrbxYpYkbwZcV21O+tI=
+SIZE (cdo-2.5.4.tar.gz) = 14047414